PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g033950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 360aa    MW: 40447.6 Da    PI: 7.2404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g033950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006152174123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+++Fs+   L  H  +H
  Sopen05g033950.1 152 YECKTCNRTFSSFQALGGHRASH 174
                       99**********99999998887 PP

2zf-C2H214.30.00012246268123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F++   L  H+r+H
  Sopen05g033950.1 246 HTCSYCGAEFTSGQALGGHMRRH 268
                       79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.81E-8151174No hitNo description
PfamPF139121.4E-12151176IPR007087Zinc finger, C2H2
SMARTSM003550.063152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.258152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576673.81E-8241268No hitNo description
Gene3DG3DSA:3.30.160.607.0E-4244270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0079246268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367246273IPR007087Zinc finger, C2H2
PfamPF139121.6E-11246270IPR007087Zinc finger, C2H2
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSST GDTNVDGTVN GEEVNDNDNN  60
NNDSSPPCTT SGKNFLDDDV PTEEEEETAK CLILLSQGGH HHHHHHRRQT PPKKFLDLFN  120
DDMGLYQTKF NSKRYVETTD LGNGAKAGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL  180
TIEPKKHPFF YFSDQDEPSP PPATTPPNYK YNNKLSPTLS PLSSQFNNIN MESAPNYNKS  240
QSPRIHTCSY CGAEFTSGQA LGGHMRRHRG GANINNTILC LSPLSIDQEY ANYNLKKPRN  300
GLSLDLNLPA PQDYQNQSRN LQHPPKYPQE QAQKQQQQEE EQQQTTLVLS TTPQLIDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075787.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLK4C2M60.0K4C2M6_SOLLC; Uncharacterized protein
STRINGSolyc05g055500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.17e-48C2H2 family protein